'ADDA is an open-source parallel implementation of the discrete dipole approximation, capable to simulate light scattering by particles of arbitrary shape and composition in a wide range of particle sizes. 'AdapterRemoval searches for and removes remnant adapter sequences from High-Throughput Sequencing (HTS) data and (optionally) trims low quality bases from the 3' end of reads following adapter removal.' 'ACTC converts independent triangles into triangle strips or fans.' It can read complete EMBL, GENBANK and GFF entries or sequences in FASTA or raw format. It can be used to identify and analyse regions of similarity and difference between genomes and to explore conservation of synteny, in the context of the entire sequences and their annotation. ' ACT is a Java application for displaying pairwise comparisons between two or more DNA sequences. ACML is ideal for weather modeling, computational fluid dynamics, financial analysis, oil and gas applications and more. 'ACML provides a free set of thoroughly optimized and threaded math routines for HPC, scientific, engineering and related compute-intensive applications. 'Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler URL: ' It comes bundled with multiple databases: Resfinder, CARD, ARG-ANNOT, NCBI BARRGD, NCBI, EcOH, PlasmidFinder, Ecoli_VF and VFDB. 'Mass screening of contigs for antimicrobial resistance or virulence genes.

'ABRA2 is an updated implementation of ABRA featuring: RNA support, Improved scalability (Human whole genomes now supported), Improved accuracy, Improved stability and usability (BWA is no longer required to run ABRA although we do recommend BWA as the initial aligner for DNA) URL: ' 'ABINIT is a package whose main program allows one to find the total energy, charge density and electronic structure of systems made of electrons and nuclei (molecules and periodic solids) within Density Functional Theory (DFT), using pseudopotentials and a planewave or wavelet basis.' 'Finite Element Analysis software for modeling, visualization and best-in-class implicit and explicit dynamics FEA. 'ABACAS2, a tool for ordering and orientating biosequences along a reference'

'AAF constructs phylogenies directly from unassembled genome sequence data, bypassing both genome assembly and alignment.' 'A software package for algebraic, geometric and combinatorial problems on linear spaces' ' lib3to2 is a set of fixers that are intended to backport code written for Python version 3.x into Python version 2.x.'

For mac download MPC-BE 1.6.10